Diversity in times of adversity: probabilistic strategies in microbial survival games.

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Journal of Theoretical Biology

• Publication date

  2005-05-21

• Fields of study

  Biology, Computer Science, Mathematics, Environmental Science, Medicine

• Identifiers
  DOI 10.1016/J.JTBI.2004.11.020PMID 15757681
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A microbial modified prisoner's dilemma game: how frequency-dependent selection can lead to random phase variation.

  2005influential reference
• Integrating high-throughput and computational data elucidates bacterial networks

  2004cited by this paper
• Design and Diversity in Bacterial Chemotaxis: A Comparative Study in Escherichia coli and Bacillus subtilis

  2004cited by this paper
• Association and dissociation kinetics for CheY interacting with the P2 domain of CheA.

  2004cited by this paper
• Bacterial Persistence as a Phenotypic Switch

  2004cited by this paper
• Programmable cells: interfacing natural and engineered gene networks.

  2004cited by this paper
• Motifs, modules and games in bacteria.

  2003influential reference
• Genetic characterization of pilin glycosylation and phase variation in Neisseria meningitidis

  2003cited by this paper
• Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration

  2003cited by this paper
• Environmental stresses can alleviate the average deleterious effect of mutations

  2003cited by this paper
• Epidemiology, hypermutation, within–host evolution and the virulence of Neisseria meningitidis

  2003cited by this paper
• 'Small' talk: Opa proteins as mediators of Neisseria-host-cell communication.

  2003cited by this paper
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  2003cited by this paper
• Structure and function of the feed-forward loop network motif

  2003cited by this paper
• Flagellar Phase Variation in Salmonella enterica Is Mediated by a Posttranscriptional Control Mechanism

  2003cited by this paper
• Escape from Prisoner's Dilemma in RNA phage phi6.

  2003cited by this paper
• Dynamical and integrative cell signaling: challenges for the new biology

  2003cited by this paper
• Escape from Prisoner’s Dilemma in RNA Phage Φ6

  2003cited by this paper
• Bacterial biofilms: prokaryotic adventures in multicellularity.

  2003cited by this paper
• Phase Variation in the Phage Growth Limitation System of Streptomyces coelicolor A3(2)

  2003cited by this paper
• Cannibalism by Sporulating Bacteria

  2003cited by this paper
• Fighting change with change: adaptive variation in an uncertain world

  2002influential reference
• Self-perpetuating epigenetic pili switches in bacteria

  2002cited by this paper
• Signal Processing by Simple Chemical Systems

  2002cited by this paper
• Computational systems biology

  2002cited by this paper
• Fifteen Minutes of fim: Control of Type 1 Pili Expression in E. coli

  2002cited by this paper
• Herpes viruses hedge their bets

  2002cited by this paper
• Induction of natural competence in Streptococcus pneumoniae triggers lysis and DNA release from a subfraction of the cell population

  2002cited by this paper
• Matrix Population Models: Construction, Analysis, and Interpretation

  2002influential reference
• Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability.

  2002cited by this paper
• Error catastrophe and antiviral strategy

  2002cited by this paper
• Control, exploitation and tolerance of intracellular noise

  2002influential reference
• Molecular mimicry in Campylobacter jejuni and Helicobacter pylori lipopolysaccharides: contribution of gastrointestinal infections to autoimmunity.

  2001cited by this paper
• General stress response of Bacillus subtilis and other bacteria.

  2001cited by this paper
• Playing Dr Jekyll and Mr Hyde: combined mechanisms of phase variation in bacteria.

  2001influential reference
• Brownian ratchets and Parrondo's games.

  2001cited by this paper
• Environmental sensing mechanisms in Bordetella.

  2001cited by this paper
• The regulation of pap and type 1 fimbriation in Escherichia coli.

  2001cited by this paper
• Variable timing of reproduction in unpredictable environments: adaption of flood plain plants.

  2001cited by this paper
• Molecular models accounting for the gene conversion reactions mediating gonococcal pilin antigenic variation

  2000cited by this paper
• The population genetics of ecological specialization in evolving Escherichia coli populations

  2000cited by this paper
• Antiretroviral therapy.

  2000cited by this paper
• The Probablistic Method

  2000cited by this paper
• Molecular switches — the ON and OFF of bacterial phase variation

  1999influential reference
• When the going gets tough: survival strategies and environmental signaling networks in Bacillus subtilis.

  1999influential reference
• Prisoner's dilemma in an RNA virus

  1999cited by this paper
• Neither the Bvg− Phase nor thevrg6 Locus of Bordetella pertussis Is Required for Respiratory Infection in Mice

  1998cited by this paper
• Synergistic kinetic interactions between components of the phosphorelay controlling sporulation in Bacillus subtilis.

  1998cited by this paper
• A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements.

  1998cited by this paper
• The Probabilistic Method

  1998cited by this paper
• Transformation competence and type-4 pilus biogenesis in Neisseria gonorrhoeae--a review.

  1997influential reference
• The exaptive excellence of spandrels as a term and prototype.

  1997cited by this paper
• Stochastic mechanisms in gene expression.

  1997cited by this paper
• The inheritance of phenotypes: an adaptation to fluctuating environments.

  1996cited by this paper
• Evolution of the genetic switch in temperate bacteriophage. I. Basic theory.

  1996cited by this paper
• Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis.

  1995influential reference
• Updating Gillespie with Controlled Chaos

  1995cited by this paper
• A multiple site‐specific DNA‐inversion model for the control of Ompi phase and antigenic variation in Dichelobacter nodosus

  1995cited by this paper
• Optimality Models and the Test of Adaptationism

  1994cited by this paper
• Markov Processes: An Introduction for Physical Scientists

  1991influential reference
• Linear controller design: limits of performance

  1991cited by this paper
• Population Dynamics in Variable Environments

  1990influential reference
• Phase variation in Bordetella pertussis by frameshift mutation in a gene for a novel two-component system

  1989cited by this paper
• Extinction dynamics of age-structured populations in a fluctuating environment.

  1988cited by this paper
• An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli.

  1985cited by this paper
• Genetic analysis of phase change in Bordetella pertussis

  1984cited by this paper
• A stochastic age-structured population model of striped bass (Morone saxatilis) in the Potomac River

  1983influential reference
• Population dynamics in variable environments. III. Evolutionary dynamics of r-selection

  1982cited by this paper
• Single-nutrient microbial competition: qualitative agreement between experimental and theoretically forecast outcomes.

  1980influential reference
• Rate-limiting steps in RNA chain initiation.

  1980cited by this paper
• Evolutionarily stable dispersal strategies.

  1980cited by this paper
• Nonlinear systems analysis

  1979cited by this paper
• The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme

  1979cited by this paper
• On the microeconomic theory of investment under uncertainty

  1977cited by this paper
• Evolution and the theory of games

  1976influential reference
• Logic of animal conflict

  1975cited by this paper
• The Role of Migration in the Genetic Structure of Populations in Temporarily and Spatially Varying Environments. I. Conditions for Polymorphism

  1975cited by this paper
• The Logic of Animal Conflict

  1973cited by this paper
• Natural selection with varying selection coefficients – a haploid model

  1973cited by this paper
• Edinburgh Research Explorer Environmental regulation of the fim switch controlling type 1 fimbrial phase variation in Escherichia coli K-12: effects of temperature and media

  year unknowncited by this paper

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• A Minimal Genetic Circuit for Cellular Anticipation

  2025cites this paper
• Defining and finding lifelike entities with a lazy filter

  2025cites this paper
• Nonequilibrium Theory for Adaptive Systems in Varying Environments

  2025cites this paper
• Bimodality in E. coli gene expression: Sources and robustness to genome-wide stresses

  2025cites this paper
• A mismatch between slow protein synthesis and fast environmental fluctuations determines tradeoffs in bacterial proteome allocation strategies

  2025cites this paper
• Parrondo's paradox reveals counterintuitive wins in biology and decision making in society.

  2024cites this paper
• Widespread loss-of-function mutations implicating preexisting resistance to new or repurposed anti-tuberculosis drugs.

  2024cites this paper
• Phenotypic heterogeneity in temporally fluctuating environments

  2024cites this paper
• Diversity in Evolutionary Dynamics

  2024cites this paper
• Phenotypic Heterogeneity in Pathogens.

  2024cites this paper
• Evolution of a bistable genetic system in fluctuating and nonfluctuating environments

  2024cites this paper
• Noise-induced Parrondo's paradox in discrete-time quantum walks.

  2023cites this paper
• Territories of Parrondo’s paradox and its entanglement dynamics in quantum walks

  2023cites this paper
• Markov chains applied to Parrondo's paradox: The coin tossing problem

  2023cites this paper
• Fitness cost associated with cell phenotypic switching drives population diversification dynamics and controllability

  2023cites this paper
• Periodic noise-induced framework for history-dependent Parrondo’s switching

  2022cites this paper
• Geometric speed limit for acceleration by natural selection in evolutionary processes

  2022cites this paper
• A Coupling Approach to Analyzing Games With Dynamic Environments

  2022cites this paper
• Parrondo's paradox in quantum walks with three coins.

  2022cites this paper
• Neuronal temperature perception induces specific defenses that enable C. elegans to cope with the enhanced reactivity of hydrogen peroxide at high temperature

  2022cites this paper
• Waddington’s Landscapes in the Bacterial World

  2021cites this paper
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• Parrondo's paradox in quantum walks with deterministic aperiodic sequence of coins.

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• Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide

  2021cites this paper
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
• Perturbation-Driven Entropy as a Source of Cancer Cell Heterogeneity.

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• Parrondo paradoxical walk using four-sided quantum coins.

  2020cites this paper
• Generalized Solutions of Parrondo's Games

  2020cites this paper
• Model genotype–phenotype mappings and the algorithmic structure of evolution

  2019cites this paper
• Evolutionary regain of lost gene circuit function

  2019cites this paper
• Epigenetic switching as a strategy for quick adaptation while constraining biochemical noise

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  2019cites this paper
• Persistence as an optimal hedging strategy

  2019cites this paper
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  2019cites this paper
• Extracellular Lectin Produced by Bacillus subtilis Strain IMV B-7014 Depending on the Culture Conditions

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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2017cites this paper
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  2017cites this paper
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  2017cites this paper
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  2017cites this paper
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  2017cites this paper
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  2017cites this paper
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  2017influential citation
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  2017cites this paper
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  2017influential citation
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