Structure of Sediment-Associated Microbial Communities along a Heavy-Metal Contamination Gradient in the Marine Environment

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Applied and Environmental Microbiology

• Publication date

  2005-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/AEM.71.2.679-690.2005PMID 15691917PMCID PMC546797
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• PHYLIP (Phylogeny Inference Package)

  2004cited by this paper
• Contaminant levels in sediments and asteroids (Asterias rubens L., Echinodermata) from the Belgian coast and Scheldt estuary: polychlorinated biphenyls and heavy metals.

  2004cited by this paper
• Top-down impact of bacterivorous nematodes on the bacterial community structure: a microcosm study.

  2004cited by this paper
• The effect of an acute copper exposure on the diversity of a microbial community in North Sea sediments as revealed by DGGE analysis--the importance of the protocol.

  2004cited by this paper
• Bacterial Community Dynamics and Hydrocarbon Degradation during a Field-Scale Evaluation of Bioremediation on a Mudflat Beach Contaminated with Buried Oil

  2004cited by this paper
• Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge.

  2003cited by this paper
• Echinoderms as Bioindicators, Bioassays, and Impact Assessment Tools of Sediment-Associated Metals and PCBs in the North Sea

  2003cited by this paper
• Differences in Hyporheic-Zone Microbial Community Structure along a Heavy-Metal Contamination Gradient

  2003influential reference
• The distribution of trace metals in Florida Bay sediments.

  2003cited by this paper
• Field contamination of the starfish Asterias rubens by metals. Part 1: Short‐ and long‐term accumulation along a pollution gradient

  2003cited by this paper
• Are viruses driving microbial diversification and diversity?

  2003cited by this paper
• Activity, Distribution, and Diversity of Sulfate Reducers and Other Bacteria in Sediments above Gas Hydrate (Cascadia Margin, Oregon)

  2003cited by this paper
• Microbial community variation in pristine and polluted nearshore Antarctic sediments.

  2003influential reference
• Cultivation-Dependent and -Independent Approaches for Determining Bacterial Diversity in Heavy-Metal-Contaminated Soil

  2003cited by this paper
• Analysis of the Sulfate-Reducing Bacterial and Methanogenic Archaeal Populations in Contrasting Antarctic Sediments

  2003cited by this paper
• Biodiversity, Community Structural Shifts, and Biogeography of Prokaryotes within Antarctic Continental Shelf Sediment

  2003cited by this paper
• Prokaryotic Metabolic Activity and Community Structure in Antarctic Continental Shelf Sediments

  2003cited by this paper
• Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system

  2003cited by this paper
• Association of Microbial Community Composition and Activity with Lead, Chromium, and Hydrocarbon Contamination

  2002cited by this paper
• Robust Hydrocarbon Degradation and Dynamics of Bacterial Communities during Nutrient-Enhanced Oil Spill Bioremediation

  2002cited by this paper
• Comparison between non-residual Al, Co, Cu, Fe, Mn, Ni, Pb and Zn released by a three-step sequential extraction procedure and a dilute hydrochloric acid leach for soil and road deposited sediment

  2002cited by this paper
• Microbial Diversity of Hydrothermal Sediments in the Guaymas Basin: Evidence for Anaerobic Methanotrophic Communities

  2002cited by this paper
• Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil.

  2001cited by this paper
• Microvariation Artifacts Introduced by PCR and Cloning of Closely Related 16S rRNA Gene Sequences

  2001cited by this paper
• Quantitative Molecular Analysis of the Microbial Community in Marine Arctic Sediments (Svalbard)

  2001influential reference
• Microbial Manganese and Sulfate Reduction in Black Sea Shelf Sediments

  2000cited by this paper
• Whole-Cell versus Total RNA Extraction for Analysis of Microbial Community Structure with 16S rRNA-Targeted Oligonucleotide Probes in Salt Marsh Sediments

  2000cited by this paper
• Community Structure, Cellular rRNA Content, and Activity of Sulfate-Reducing Bacteria in Marine Arctic Sediments

  2000influential reference
• Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slot-blot hybridization in a coastal marine sediment.

  1999cited by this paper
• Speciation of heavy metals in marine sediments vs their bioaccumulation by mussels.

  1999cited by this paper
• Correlation between structural diversity and catabolic versatility of metal-affected prototrophic bacteria in soil

  1999cited by this paper
• The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

  1999cited by this paper
• Microbial Diversity in Sediments Collected from the Deepest Cold-Seep Area, the Japan Trench

  1999cited by this paper
• Biodiversity in deep-sea sites located near the south part of Japan

  1999cited by this paper
• High Bacterial Diversity in Permanently Cold Marine Sediments

  1999cited by this paper
• Genetic changes in the bacterial community structure associated with protistan grazers

  1999cited by this paper
• Bacterial diversity in deep-sea sediments from different depths

  1999cited by this paper
• Nitrogen Cycling and Community Structure of Proteobacterial β-Subgroup Ammonia-Oxidizing Bacteria within Polluted Marine Fish Farm Sediments

  1999cited by this paper
• Microbial Population Changes during Bioremediation of an Experimental Oil Spill

  1998cited by this paper
• Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes.

  1998cited by this paper
• Microbial Community Composition of Wadden Sea Sediments as Revealed by Fluorescence In Situ Hybridization

  1998influential reference
• A Polyphasic Approach To Study the Diversity and Vertical Distribution of Sulfur-Oxidizing ThiomicrospiraSpecies in Coastal Sediments of the German Wadden Sea

  1998cited by this paper
• Genetic Diversity of the Biofilm CoveringMontacuta ferruginosa (Mollusca, Bivalvia) as Evaluated by Denaturing Gradient Gel Electrophoresis Analysis and Cloning of PCR-Amplified Gene Fragments Coding for 16S rRNA

  1998cited by this paper
• The Effect of Longterm Exposure to Mercury on the Bacterial Community in Marine Sediment

  1998cited by this paper
• Effect of Metal-Rich Sludge Amendments on the Soil Microbial Community

  1998cited by this paper
• Abundance and spatial organization of Gram-negative sulfate-reducing bacteria in activated sludge investigated by in situ probing with specific 16S rRNA targeted oligonucleotides

  1998cited by this paper
• Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review

  1998cited by this paper
• Validation of the asteroid Asterias rubens (Echinodermata) as a bioindicator of spatial and temporal trends of Pb, Cd, and Zn contamination in the field

  1998cited by this paper
• Biomass carbon measurements and substrate utilization patterns of microbial populations from soils amended with cadmium, copper, or zinc

  1997cited by this paper
• Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis

  1997cited by this paper
• Screening for Genetic Diversity of Isolates of Anaerobic Fe(II)-oxidizing Bacteria Using DGGE and Wh

  1997cited by this paper
• Sediments and Toxic Substances

  1996influential reference
• Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria

  1996cited by this paper
• Phylogenetic analysis of the bacterial communities in marine sediments

  1996cited by this paper
• Tiltaksorienterte miljøundersøkelser i Sørfjorden og Hardangerfjorden 1995. Delrapport 2: Miljøgifter i organismer. (Environmental monitoring in Sørfjorden and Hardangerfjorden 1995. Report no 2: Micropollutants in organisms)

  1996influential reference
• Applications of network BLAST server.

  1996cited by this paper
• Depth profile of sulfate-reducing bacterial ribosomal RNA and mercury methylation in an estuarine sediment

  1996cited by this paper
• Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment.

  1996cited by this paper
• Enumeration and phylogenetic analysis of polycyclic aromatic hydrocarbon-degrading marine bacteria from Puget sound sediments

  1996cited by this paper
• Enumeration of sandy sediment bacteria: search for optimal protocol

  1995cited by this paper
• Toxic metals in aquatic ecosystems: a microbiological perspective.

  1995cited by this paper
• In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides.

  1994cited by this paper
• Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms.

  1993cited by this paper
• Comparison of Nucleic Acid Hybridization and Fluorometry for Measurement of the Relationship between RNA/DNA Ratio and Growth Rate in a Marine Bacterium

  1993cited by this paper
• Bacterial PCB biodegradation

  1992cited by this paper
• Phylogenetic Oligodeoxynucleotide Probes for the Major Subclasses of Proteobacteria: Problems and Solutions

  1992cited by this paper
• Development and application of nucleic acid probes

  1991cited by this paper
• Nucleic acid techniques in bacterial systematics

  1991cited by this paper
• Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations

  1990cited by this paper
• Effects of heavy metals in soil on microbial processes and populations (a review)

  1989cited by this paper
• Methods in aquatic bacteriology

  1988cited by this paper
• Adaptation of Aquatic Microbial Communities to Hg2+ Stress

  1987cited by this paper
• The Biological Methylation of Metals and Metalloids

  1982cited by this paper
• Microbes and Metals

  year unknowncited by this paper

• Immobilization of arsenic and antimony in contaminated soil by nano silica–biogenic Fe (Hydr)oxide composites: Soil properties and microbial community impacts

  2026cites this paper
• Mechanisms of enhanced pollutant removal and microbial adaptation in stormwater infiltration systems with construction wastes as key fillers

  2026cites this paper
• Assembly processes of bacterial community and characteristics of keystone taxa in farmland soils under single cadmium and combined cadmium-chromium pollution

  2025cites this paper
• Impacts on Sedimentary Microbial Communities Related to Temporal Changes in Trace Metal Concentrations

  2025cites this paper
• P-modified biochar alters the microbial community in heavy metal-contaminated soils by regulating nutrient supply balance

  2025cites this paper
• Preliminary study on mercury pollution affecting soil bacteria near a mercury mining area

  2025cites this paper
• PCB-oxidizing bacteria in Arctic and Antarctic lakes: insights into bioremediation potential in polar ecosystems

  2025cites this paper
• Impact of heavy metal pollution on the Hindon River sediment: exploring microbial diversity and functional insights through metagenomics

  2025cites this paper
• Microbial community structure and causal analysis in sediments of shallow eutrophic freshwater lakes under heavy metal compound pollution.

  2025cites this paper
• Biodetoxification of As3+ and Cr6+ with Enrichment of Exoelectrogens in Microbial Fuel Cell

  2025cites this paper
• Distribution of microbial taxa and genes degrading halogenated organic pollutants in the mangroves.

  2025cites this paper
• Combined application of biochar and PGPB on crop growth and heavy metals accumulation: A meta-analysis.

  2025cites this paper
• Biotransformations of arsenic in marine sediments across marginal slope to hadal zone.

  2024cites this paper
• Microbial communities as indicators of marine ecosystem health: Insights from coastal sediments in the eastern Adriatic Sea.

  2024cites this paper
• Heavy metals in a typical industrial area-groundwater system of North China: spatial distribution, microbial response and ecological risk.

  2024cites this paper
• The responses of root exudates and microbiome in the rhizosphere of main plant and aromatic intercrops to soil Cr stress.

  2024cites this paper
• The Effects of Mine Waste and Rain Water on the Structure of Bacteria Community of Paddy Soils

  2024cites this paper
• Distiller’s Grain-Derived Biochar as Novel Soil Amendment Benefits Growth and Decreases Cd Uptake of Wheat by Modifying Cd Fractions and Rhizospheric Microbiota

  2024cites this paper
• PAH contamination in coastal surface sediments and associated bacterial communities

  2024cites this paper
• Heavy metal induced shifts in microbial community composition and interactions with dissolved organic matter in coastal sediments.

  2024cites this paper
• Svalbard Fjord Sediments as a Hotspot of Functional Diversity and a Reservoir of Antibiotic Resistance

  2024cites this paper
• Exploring the sediment-associated microbiota of the Mar Menor coastal lagoon

  2024cites this paper
• Comparative Metatranscriptomics of Rhizosphere Microbiomes in Survived and Dead Cocoa Plants Under Drought Condition

  2024cites this paper
• Integrating rhizosphere bacterial structure and metabolites with soil Cd availability in different parent paddy soils.

  2024cites this paper
• Ecological risk assessment of heavy metals in the sediments and their impacts on bacterial community structure: A case study of Bamen Bay in China.

  2023cites this paper
• Sediment Microbiota as a Proxy of Environmental Health: Discovering Inter- and Intrakingdom Dynamics along the Eastern Mediterranean Continental Shelf

  2023cites this paper
• The study on the effect of mercury pollution on soil microorganisms around mercury mining area

  2023cites this paper
• Unveiling the impact and mechanisms of Cd-driven ecological assembly and coexistence of bacterial communities in coastal sediments of Yellow Sea.

  2023cites this paper
• Distinct mediating patterns between metal filtering and species coexistence of rare and abundant subcommunities in heavily polluted river sediments.

  2023cites this paper
• Shifts in sediment bacterial communities reflect changes in depositional environments in a fluviatile context.

  2023cites this paper
• Microbial diversity and functional profiling in coastal tidal flat sediment with pollution of nutrients and potentially toxic elements

  2023cites this paper
• Effects of norfloxacin, copper, and their interactions on microbial communities in estuarine sediment.

  2022cites this paper
• Factors structuring microbial communities in highly impacted coastal marine sediments (Mar Menor lagoon, SE Spain)

  2022cites this paper
• The evaluation of Hudson River sediment as a growth substrate - Microbial activity, PCB-degradation potential and risk assessment.

  2022cites this paper
• Effects of crude oil and gas condensate spill on coastal benthic microbial populations

  2022cites this paper
• Microbial indicators along a metallic contamination gradient in tropical coastal sediments.

  2022cites this paper
• Exploring the diversity and structural response of sediment-associated microbiota communities to environmental pollution at the siangshan wetland in Taiwan using environmental DNA metagenomic approach

  2022cites this paper
• Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

  2021cites this paper
• Metabolite profiling, histological and oxidative stress responses in the grey mullet, Mugil cephalus exposed to the environmentally relevant concentrations of the heavy metal, Pb (NO3)2.

  2021cites this paper
• Benthic microbial diversity trends in response to heavy metals in an oxygen-deficient eutrophic bay of the Humboldt current system offshore the Atacama Desert.

  2021cites this paper
• Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community

  2021cites this paper
• Assessment of microbial structure and functions in coastal sediments

  2021cites this paper
• Longitudinal patterns in sediment type and quality during daily flow regimes and following natural hazards in an urban estuary: a Hurricane Harvey retrospective

  2021cites this paper
• Microbial community structure and metabolic potential in the coastal sediments around the Yellow River Estuary.

  2021cites this paper
• Legacy Metal Contaminants and Excess Nutrients in Low Flow Estuarine Embayments Alter Composition and Function of Benthic Bacterial Communities

  2021cites this paper
• Deciphering the molecular signal from past and alive bacterial communities in aquatic sedimentary archives

  2021cites this paper
• Soil microbial community structure and functionality changes in response to long‐term metal and radionuclide pollution

  2021cites this paper
• Influence of heavy metals on the occurrence of Antarctic soil microalgae

  2021cites this paper
• Effect of culturing ryegrass (Lolium perenne L.) on Cd and pyrene removal and bacteria variations in co-contaminated soil

  2021cites this paper
• Graphene oxide influences bacterial community and soil environments of Cd-polluted Haplic Cambisols in Northeast China

  2020cites this paper
• A non-invasive method to monitor marine pollution from bacterial DNA present in fish skin mucus.

  2020cites this paper
• Effects of lead (Pb) in stormwater runoff on the microbial characteristics and organics removal in bioretention systems.

  2020cites this paper
• How does the microenvironment change during the stabilization of cadmium in exogenous remediation sediment?

  2020cites this paper
• Defining the sediment prokaryotic communities of the Indian River Lagoon, FL, USA, an Estuary of National Significance

  2020cites this paper
• Marine biotechnologies for the decontamination and restoration of degraded marine habitats

  2020cites this paper
• Ecological Effects of Heavy Metal Pollution on Soil Microbial Community Structure and Diversity on Both Sides of a River around a Mining Area

  2020cites this paper
• Diversity of Metal-Resistant and Tensoactive-Producing Culturable Heterotrophic Bacteria Isolated from a Copper Mine in Brazilian Amazonia

  2020cites this paper
• Graphene oxide influences bacterial community and soil environments of Cd-polluted Haplic Cambisols in Northeast China

  2020cites this paper
• Cadmium Pollution Impact on the Bacterial Community of Haplic Cambisols in Northeast China and Inference of Resistant Genera

  2020cites this paper
• Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments.

  2020cites this paper
• Chemical contamination can promote turnover diversity of benthic prokaryotic assemblages: The case study of the Bagnoli-Coroglio bay (southern Tyrrhenian Sea).

  2020cites this paper
• Metal resistance genes enrichment in marine biofilm communities selected by biocide-containing surfaces in temperate and tropical coastal environments.

  2020cites this paper
• Deciphering the rhizosphere microbiome of a bamboo plant in response to different chromium contamination levels.

  2020cites this paper
• Effect of cadmium contamination on the rhizosphere bacterial diversity of Echinocactus platyacanthus

  2020cites this paper
• Exploring the impacts of heavy metals on spatial variations of sediment-associated bacterial communities.

  2020cites this paper
• Changes of Enzymatic Activities, Substrate Utilization Pattern, and Microbial Community Diversity in Heavy Metal-Contaminated Soils

  2020cites this paper
• Application of metagenomics in remediation of contaminated sites and environmental restoration

  2020cites this paper
• Marine Niche: Applications in Pharmaceutical Sciences: Translational Research

  2020cites this paper
• Impact of cigarette butts on microbial diversity and dissolved trace metals in coastal marine sediment

  2020cites this paper
• Defining the sediment microbiome of the Indian River Lagoon, FL, USA, an Estuary of National Significance

  2020cites this paper
• Marine Bacteria—A Treasure House of Valuable Products and Functions

  2020cites this paper
• Sediment Microbial Communities and Their Potential Role as Environmental Pollution Indicators in Xuande Atoll, South China Sea

  2020cites this paper
• Prokaryotic community composition and distribution in coastal sediments following a Po river flood event (northern Adriatic Sea, Italy)

  2020cites this paper
• Integrated assessment of west coast of South Korea by use of benthic bacterial community structure as determined by eDNA, concentrations of contaminants, and in vitro bioassays.

  2020cites this paper
• Distribution of microbial communities in metal-contaminated nearshore sediment from Eastern Guangdong, China.

  2019cites this paper
• Heavy metal spill influences bacterial communities in freshwater sediments

  2019cites this paper
• Depth-related change of sulfate-reducing bacteria community in mangrove sediments: The influence of heavy metal contamination.

  2019cites this paper
• Variations of Abundance and Community Structure of Ammonia Oxidizers and Nitrification Activity in Two Paddy Soils Polluted by Heavy Metals

  2019cites this paper
• Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area

  2019cites this paper
• Advances in characterizing microbial community change and resistance upon exposure to lead contamination: Implications for ecological risk assessment

  2019cites this paper
• Bacterial Community Characteristics and Detection of Denitrifying Functional Genes nirS, nirk in the Coastal Water of Bohai Bay, China Bacterial and denitrifying functional genes in Bohai

  2019cites this paper
• Evaluating the response of anaerobic ammonium-oxidizing bacteria to heavy metal spill in freshwater sediment

  2019cites this paper
• Using flow cytometry for bacterioplankton community analysis as a complementary tool to Water Framework Directive to signal putatively impacted sites.

  2019cites this paper
• Metal bioavailability and the soil microbiome

  2019cites this paper
• Towards an urban marine ecology: characterizing the drivers, patterns and processes of marine ecosystems in coastal cities

  2019cites this paper
• Heavy metal tolerance and polychlorinated biphenyl oxidation in bacterial communities inhabiting the Pasvik River and the Varanger Fjord area (Arctic Norway).

  2019cites this paper
• Heavy metals, antibiotics and nutrients affect the bacterial community and resistance genes in chicken manure composting and fertilized soil.

  2019cites this paper
• Nutrients and heavy metals mediate the distribution of microbial community in the marine sediments of the Bohai Sea, China.

  2019cites this paper
• Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome.

  2018cites this paper
• Bacterial community structure and abundances of antibiotic resistance genes in heavy metals contaminated agricultural soil

  2018cites this paper
• Metatranscriptome analysis of the intestinal microorganisms in Pardosa pseudoannulata in response to cadmium stress.

  2018cites this paper
• Effects of Pb Smelting on the Soil Bacterial Community near a Secondary Lead Plant

  2018cites this paper
• Responses of riverbed sediment bacteria to heavy metals: Integrated evaluation based on bacterial density, activity and community structure under well-controlled sequencing batch incubation conditions.

  2018cites this paper
• Abundance and Structure Composition of nirK and nosZ Genes as Well as Denitrifying Activity in Heavy Metal-polluted Paddy Soils

  2018cites this paper
• Effect of untreated urban effluents on the accumulation of toxic metals in river sediments under tropical conditions: Funa River, Kinshasa, Democratic Republic of the Congo

  2018cites this paper
• Effects of copper and butyltin compounds on the growth, photosynthetic activity and toxin production of two HAB dinoflagellates: The planktonic Alexandrium catenella and the benthic Ostreopsis cf. ovata.

  2018cites this paper
• Testing the efficiency of a bacterial community-based index (microgAMBI) to assess distinct impact sources in six locations around the world

  2018cites this paper
• The influence of sediment bioturbation on contaminated sediment biogeochemistry, contaminant exposure and toxicity to benthic organisms: perspectives on assessment and remediation.

  2018influential citation
• Shifts in the structure and function of the microbial community in response to metal pollution of fresh water sediments in Finland

  2018cites this paper
• Effect of Acidic Industrial Effluent Release on Microbial Diversity and Trace Metal Dynamics During Resuspension of Coastal Sediment

  2018cites this paper