We describe a method for extracting Boolean implications (if-then relationships) in very large amounts of gene expression microarray data. A meta-analysis of data from thousands of microarrays for humans, mice, and fruit flies finds millions of implication relationships between genes that would be missed by other methods. These relationships capture gender differences, tissue differences, development, and differentiation. New relationships are discovered that are preserved across all three species.
Boolean implication networks derived from large scale, whole genome microarray datasets
D. Sahoo,D. Dill,A. Gentles,R. Tibshirani,S. Plevritis
Published 2008 in Genome Biology
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- Publication year
2008
- Venue
Genome Biology
- Publication date
2008-10-30
- Fields of study
Biology, Medicine, Computer Science
- Identifiers
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- Source metadata
Semantic Scholar, PubMed
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