Analysis of nifH Gene Pool Complexity in Soil and Litter at a Douglas Fir Forest Site in the Oregon Cascade Mountain Range

No abstract is available for this paper.

• Publication year

  1999

• Venue

  Applied and Environmental Microbiology

• Publication date

  1999-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/AEM.65.2.374-380.1999PMID 9925556PMCID PMC91035
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The RDP-II (Ribosomal Database Project)

  2001cited by this paper
• The sensitivity of snowmelt processes to climate conditions and forest cover during rain‐on‐snow: a case study of the 1996 Pacific Northwest flood

  1998cited by this paper
• A Highly Selective PCR Protocol for Detecting 16S rRNA Genes of the Genus Pseudomonas (Sensu Stricto) in Environmental Samples

  1998cited by this paper
• An improved method for purifying DNA from soil for polymerase chain reaction amplification and molecular ecology applications

  1997cited by this paper
• Biological Nitrogen Fixation

  1997cited by this paper
• Respiration, nitrogen fixation, and mineralizable nitrogen spatial and temporal patterns within two Oregon Douglas-fir stands

  1997cited by this paper
• Introduction of anaerobic dechlorinating bacteria into soil slurry microcosms and nested-PCR monitoring

  1997cited by this paper
• The RDP (Ribosomal Database Project)

  1997cited by this paper
• Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

  1996cited by this paper
• Diversity of Nitrogen Fixation Genes in the Symbiotic Intestinal Microflora of the Termite Reticulitermes speratus

  1996cited by this paper
• Sensitive detection of transgenic plant marker gene persistence in soil microcosms

  1996cited by this paper
• Problems and promises of assaying the genetic potential for nitrogen fixation in the marine environment

  1996cited by this paper
• Remarkable N2-fixing bacterial diversity detected in rice roots by molecular evolutionary analysis of nifH gene sequences

  1995influential reference
• Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I.

  1995cited by this paper
• A nested PCR method for the detection of Bacillus anthracis in environmental samples collected from former tannery sites.

  1995cited by this paper
• Microbiological and biochemical properties

  1994cited by this paper
• Decomposition and nutrient dynamics of litter in long‐term optimum nutrition experiments. 11. Nutrient concentrations in decomposing Picea abies needle litter

  1994cited by this paper
• Polyphasic Taxonomy of Rhizobia: Emendation of the Genus Sinorhizobium and Description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov.

  1994cited by this paper
• TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment

  1994cited by this paper
• PCR primers containing an inosine triplet to complement a variable codon within a conserved protein-coding region.

  1994cited by this paper
• Molecular Phylogeny of Rhizobia and Their Relatives

  1993cited by this paper
• Rapid N^2 Fixation in Pines, Alder, and Locust: Evidence From the Sandbox Ecosystems Study

  1993cited by this paper
• The dinitrogen-fixing bacteria

  1991cited by this paper
• Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria

  1991cited by this paper
• Decomposition and nutrient dynamics of litter in long‐term optimum nutrition experiments

  1991cited by this paper
• Amplification, cloning, and sequencing of a nifH segment from aquatic microorganisms and natural communities

  1991cited by this paper
• Use of inosine-containing oligonucleotide primers for enzymatic amplification of different alleles of the gene coding for heat-stable toxin type I of enterotoxigenic Escherichia coli

  1991cited by this paper
• Use of degenerate oligonucleotides for amplification of the nifH gene from the marine cyanobacterium Trichodesmium thiebautii

  1989influential reference
• Survival strategies of bacteria in the natural environment.

  1987cited by this paper
• Nutrient release from litter and humus in coniferous forest soils—a mini review

  1986cited by this paper
• The neutral theory of molecular evolution.

  1983cited by this paper
• Soil Science Society of America

  1940cited by this paper

• Genetic Characterization and Symbiotic Performance of Soybean Rhizobia Under Cold and Water-Deficient Conditions in Poland

  2025cites this paper
• Characterization of Nodulation-Compatible Strains of Native Soil Rhizobia from the Rhizosphere of Soya Bean (Glycine max L.) Fields in South Africa

  2024cites this paper
• Metagenomics reveals elevated temperature causes nitrogen accumulation mainly by inhibiting nitrate reduction process in polluted water.

  2023cites this paper
• The dominant genera of nitrogenase (nifH) affects soil biological nitrogen fixation along an elevational gradient in the Hengduan mountains.

  2023cites this paper
• Alleviation of salt stress in winter wheat by Pantoea spp. endophytes isolated from spontaneous desert plants of the Sahara

  2022cites this paper
• Azotobacter—A potential symbiotic rhizosphere engineer

  2022cites this paper
• Fungal Community Composition as Affected by Litter Chemistry and Weather during Four Years of Litter Decomposition in Rainshadow Coastal Douglas-Fir Forests

  2022cites this paper
• Enantioselective effects of cyflumetofen on microbial community and related nitrogen cycle gene function in acid-soil.

  2021cites this paper
• Effects of Cellulolytic Bacteria on Nitrogen-Fixing Bacteria, 16S rRNA, nifH Gene Abundance, and Chemical Properties of Water Hyacinth Compost

  2021cites this paper
• Effect of different long-term fertilizer managements on soil nitrogen fixing bacteria community in a double-cropping rice paddy field of southern China

  2021cites this paper
• Bioindicadores de suelo asociados a diferentes regímenes de gestión de plantaciones de Cedrela odorata

  2021cites this paper
• Characterization of plant growth promoting rhizobacteria of maize

  2021cites this paper
• Soil bioindicators associated to different management regimes of Cedrela odorata plantations

  2021cites this paper
• Effects of Cellulolytic Bacteria on Nitrogen-Fixing Bacteria, 16S rRNA, nifH Gene Abundance, and Chemical Properties of Water Hyacinth Compost

  2021cites this paper
• Biogeochemical Cycling on Land

  2020cites this paper
• Effect of different short‐term tillage management on nitrogen‐fixing bacteria community in a double‐cropping paddy field of southern China

  2020cites this paper
• References

  2020cites this paper
• Azotobacter

  2020cites this paper
• A Bioinformatics Guide to Plant Microbiome Analysis

  2019cites this paper
• Methods for Detecting Biocontrol and Plant Growth-Promoting Traits in Rhizobacteria

  2019cites this paper
• Advancements in Microbial Genome Sequencing and Microbial Community Characterization

  2019cites this paper
• Termite Gut Microbiome

  2018cites this paper
• Diversity of nitrogen fixing bacterial communities in the coastal sediments of southeastern Arabian Sea (SEAS)

  2018cites this paper
• Effects of trifluralin on the soil microbial community and functional groups involved in nitrogen cycling.

  2018cites this paper
• Purple corn‐associated rhizobacteria with potential for plant growth promotion

  2018cites this paper
• Bio-effectors for improved growth, nutrient acquisition and disease resistance of crops

  2017cites this paper
• Soil nitrogen transformation responses to seasonal precipitation changes are regulated by changes in functional microbial abundance in a subtropical forest

  2017cites this paper
• Biodiversity and Physiological Properties of Bacteria Forming Systems with Glycine max (L.) Merril

  2017cites this paper
• Evolution of fixNOQP genes encoding cytochrome oxidase with high affinity to oxygen in rhizobia and related bacteria

  2017cites this paper
• Biosafety of Bt-crop in soil ecosystem: A review

  2017cites this paper
• Bacterial community structure and function shift across a northern boreal forest fire chronosequence

  2016cites this paper
• Enhancing Non-symbiotic N2 Fixation in Agriculture

  2016cites this paper
• Amplified Ribosomal DNA Restriction Analysis for the Preliminary Characterization of Native Diazotrophs Azotobacter, Acetobacter and Azospirillum

  2016cites this paper
• Molecular evidence for sediment nitrogen fixation in a temperate New England estuary

  2016influential citation
• Microbial communities and primary succession in high altitude mountain environments

  2016cites this paper
• Análisis de las poblaciones de microorganismos fijadores de nitrógeno del suelo aplicando procedimientos metagenómicos

  2016cites this paper
• Qualitative Validation of Native Diazotrophs Through nifH gene and Whole Cell Protein Profiling

  2016cites this paper
• Plant growth‐promoting Burkholderia species isolated from annual ryegrass in Portuguese soils

  2016cites this paper
• Site Specific Bioinoculants for Sustainable Agriculture in Coastal Saline Soil

  2015cites this paper
• Variation in diazotrophic community structure in forest soils reflects land use history

  2015cites this paper
• Nutrient-cycling microbes in coastal Douglas-fir forests: regional-scale correlation between communities, in situ climate, and other factors

  2015cites this paper
• Iron Oxide and Titanium Dioxide Nanoparticle Effects on Plant Performance and Root Associated Microbes

  2015cites this paper
• Microbial interactions in the rhizosphere: beneficial influences of plant growth-promoting rhizobacteria on nutrient acquisition process. A review

  2015cites this paper
• Dynamics of soil diazotrophic community structure, diversity, and functioning during the cropping period of cotton (Gossypium hirsutum)

  2015cites this paper
• Leaf-residing Methylobacterium species fix nitrogen and promote biomass and seed production in Jatropha curcas

  2015cites this paper
• Composition of supralittoral sediments bacterial communities in a Mediterranean island

  2015cites this paper
• Phylogeny of Nodulation Genes and Symbiotic Diversity of Acacia senegal (L.) Willd. and A. seyal (Del.) Mesorhizobium Strains from Different Regions of Senegal

  2015cites this paper
• Microbial quality of soil from the Pampa biome in response to different grazing pressures

  2015cites this paper
• Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles.

  2014cites this paper
• Growth stimulation of barley and biocontrol effect on plant pathogenic fungi by a Cellulosimicrobium sp. strain isolated from salt-affected rhizosphere soil in northwestern Algeria

  2014cites this paper
• Diversity of nitrogen-fixing bacteria associated with the coralPocillopora damicornisanalyzed by PCR-RFLP

  2014cites this paper
• Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

  2014cites this paper
• Cyanobacteria in New Zealand indigenous grasslands

  2014cites this paper
• Correction: A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

  2014cites this paper
• Comunidade bacteriana de uma área do bioma pampa

  2014cites this paper
• Nitrogen Metabolism and Composition of Fish Hindgut Symbiotic Communities

  2014influential citation
• Plant-microbe interaction in wheat (Triticum aestivum L.) under different crop rotations

  2014influential citation
• Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica.

  2014cites this paper
• Diversidad de las comunidades microbianas de los suelos pampeanos. Enfoques ecológicos y metagenómicos

  2014cites this paper
• Effect of Abandonment on Diversity and Abundance of Free-Living Nitrogen-Fixing Bacteria and Total Bacteria in the Cropland Soils of Hulun Buir, Inner Mongolia

  2014cites this paper
• Diversity of nitrogenase (nifh) gene pool in yam plantation field of c4 agricultural land, UTAR Perak campus

  2014cites this paper
• Phenotypic and molecular characterization of plant growth promoting Rhizobacteria isolated from the rhizosphere of wheat (Triticum durum Desf.) in Algeria

  2013cites this paper
• Evaluation of human fecal pollution in Mississippi coastal and creek waters using library independent markers

  2013cites this paper
• CHARACTERIZATION OF DIAZOTROPHIC RHIZOBACTERIA UNDER VARIOUS CONDITIONS

  2013cites this paper
• Suillus mycelia under elevated atmospheric CO2 support increased bacterial communities and scarce nifH gene activity in contrast to Hebeloma mycelia

  2013cites this paper
• MOLECULAR CHARACTERIZATION OF PLANT GROWTH PROMOTING RHIZOBACTERIUM AND ITS EFFECT ON GROWTH OF APPLE PLANTS

  2013cites this paper
• Response of Free-Living Nitrogen-Fixing Microorganisms to Land Use Change in the Amazon Rainforest

  2013cites this paper
• Screening of rhizobacteria isolated from maize (Zea mays L.) in Rio Grande do Sul State (South Brazil) and analysis of their potential to improve plant growth

  2013cites this paper
• Phylogeny and characterisation of nifH gene pool from ex-tin mining soil of Eastlake, Kampar, Perak.

  2013cites this paper
• Determination of Nitrogen Fixing capacity of Bacteria Isolated from the Rhizosphere soil of Crotolaria pallida from the Valley Districts of Manipur, India.

  2013cites this paper
• The characterisation of polymicrobial bacterial communities in the lower respiratory tract of individuals with chronic pulmonary disease

  2013cites this paper
• Translocation of metals by trees and fungi regulates pH, soil organic matter turnover and nitrogen availability in acidic forest soils

  2013cites this paper
• Process improvement of coir pith degradation involving white rot fungi by substitution of urea with nitrogen fixing bacteria and application of biodegraded coir pith as plant growth medium

  2013cites this paper
• Response of free-living nitrogen-fixing microorganisms to land use 1

  2013cites this paper
• NifH Gene Expression and Nitrogen Fixation by Diazotrophic Endophytes in Sugarcane and Sweet Potatoes

  2013cites this paper
• Assessment of nifH diversity in rhizobial isolates of different origin and the role of antioxidant in respiratory protection

  2013influential citation
• Analysis of microbial diversity by amplicon pyrosequencing

  2012cites this paper
• Diversity of free-living nitrogen-fixing microorganisms in the rhizosphere and non-rhizosphere of pioneer plants growing on wastelands of copper mine tailings.

  2012cites this paper
• Specificity of Salt Marsh Diazotrophs for Vegetation Zones and Plant Hosts: Results from a North American marsh

  2012cites this paper
• Abundance and diversity of nitrogen-fixing bacteria in rhizosphere and bulk paddy soil under different duration of organic management

  2012cites this paper
• A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

  2012cites this paper
• Samplesfor Microbial Community Correcting for Quantitative PCR Efficiency Simple Absolute Quantification Method

  2012cites this paper
• Development of a Direct Isolation Procedure for Free-Living Diazotrophs under Controlled Hypoxic Conditions

  2012cites this paper
• Endophytic Nitrogen-Fixing Bacteria as Biofertilizer

  2012cites this paper
• Microbial Nitrogen and Sulfur Cycles at the Gypsum Dunes of White Sands National Monument, New Mexico

  2012cites this paper
• Effect of inoculation with plant growth-promoting bacteria (PGPB) on amelioration of saline stress in maize (Zea mays)

  2012cites this paper
• Characterization and crop production efficiency of diazotrophic bacterial isolates from coastal saline soils.

  2012cites this paper
• Effects of long-term fertilization on nifH gene diversity in agricultural black soil

  2012cites this paper
• Simple Absolute Quantification Method Correcting for Quantitative PCR Efficiency Variations for Microbial Community Samples

  2012cites this paper
• Isolation and characterization of nitrogen fixing bacteria from raw coir pith

  2012cites this paper
• Phylogenetic diversity of nitrogen-fixing bacteria and the nifH gene from mangrove rhizosphere soil.

  2012cites this paper
• Differential responses of the diazotrophic community to aluminum-tolerant and aluminum-sensitive soybean genotypes in acidic soil

  2012cites this paper
• Laboratory techniques used for entomopathogenic fungi

  2012cites this paper
• Interactions between populations of Rhizobium, Methanotrophs and Archaea in two different lowland tropical forest soil communities

  2012cites this paper
• Effects of three different PAHs on nitrogen-fixing bacterial diversity in mangrove sediment

  2012cites this paper
• Influence of nitrogen fertilization on diazotrophic communities in the rhizosphere of the Jerusalem artichoke (Helianthus tuberosus L.).

  2012cites this paper
• Detecting bacterial endophytes in tropical grasses of the Brachiaria genus and determining their role in improving plant growth

  2012cites this paper
• Isolation and Characterization of Beneficial Bacteria Associated with Citrus Roots in Florida

  2011cites this paper
• Diversity of free-living nitrogen-fixing microorganisms in wastelands of copper mine tailings during the process of natural ecological restoration.

  2011influential citation
• EFFECTS OF A FRESHWATER TURTLE (TRACHEMYS SCRIPTA ELEGANS) ON ECOSYSTEM FUNCTIONING IN EXPERIMENTAL PONDS

  2011influential citation